LOCUS       HQ388391                6001 bp    DNA     linear   BCT 05-APR-2011
DEFINITION  Salmonella enterica strain G1823 serogroup O38 O-antigen gene
            cluster, complete sequence.
ACCESSION   HQ388391
VERSION     HQ388391.1
KEYWORDS    .
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 6001)
  AUTHORS   Li,Y., Perepelov,A.V., Guo,D., Shevelev,S.D., Senchenkova,S.N.,
            Shahskov,A.S., Liu,B., Wang,L. and Knirel,Y.A.
  TITLE     Structural and genetic relationships of two pairs of closely
            related O-antigens of Escherichia coli and Salmonella enterica : E.
            coli O11/S. enterica O16 and E. coli O21/S. enterica O38
  JOURNAL   FEMS Immunol. Med. Microbiol. 61 (3), 258-268 (2011)
   PUBMED   21205000
REFERENCE   2  (bases 1 to 6001)
  AUTHORS   Li,Y., Perepelov,A.V., Guo,D., Shevelev,S.D., Senchenkova,S.N.,
            Shahskov,A.S., Liu,B., Wang,L. and Knirel,Y.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-OCT-2010) TEDA School of Biological Sciences and
            Biotechnology, Nankai University, 23 Hongda Street, TEDA, Tianjin,
            Tianjin 300457, P.R. China
FEATURES             Location/Qualifiers
     source          1..6001
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="G1823"
                     /db_xref="taxon:28901"
                     /note="serogroup: O38"
     gene            297..1538
                     /gene="wzx"
     CDS             297..1538
                     /gene="wzx"
                     /note="flippase"
                     /codon_start=1
                     /transl_table=11
                     /product="Wzx"
                     /protein_id="ADV17630.1"
                     /translation="MFKVKAIFLLRIIGAIFALLVSIIISRILTIDEAGNVFFLLSIT
                     GVIASLSTMGQNNLILKKCASINFTIKAKSNFFNNCIIRSVVFGLLLSIILIPVIYYF
                     SNNQILYSAWYVVLLLIVFSSVNILLYSYIQSQGKVTLSIVIQYIFQPLIFMFFVFFC
                     FLCAKASGFSVSLSYLVSVVLVGSGGLVYVYRCEAEEEKTDCKKAALVPFKFRELSEY
                     FIGNSLGMIIIQSYVVLSGLLLPSSDVAIIAVSDRISLIVNLLAMSISAILAPRIASL
                     YSQGKMYDIKVLTRKAIVFITIPCVFLLVIFPFISGFLLSIFGAEYRNAGEVLLILVL
                     AQIINAALCPIYVFLNMSDKQGFISKLHIYMLIPALGLSFYLTHFFGIIGIAISKLIV
                     VALINLIPLIYSIFLFNRVTK"
     misc_feature    297..5692
                     /note="O-antigen gene cluster"
     gene            1535..2329
                     /gene="wclN"
     CDS             1535..2329
                     /gene="wclN"
                     /note="glycosyltransferase"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="ADV17631.1"
                     /translation="MRVLYSFIKRMILSIHYYLFSMAFLSFNVKKRYADRLEFDNYVS
                     TKLKKQVENKKKLPSVAAIYRVKNGAEYIEASILSISSFATQIIVVDNNSMDNTKNIV
                     EKLSNELRDVCDIKLFSYNKKLAIAGSGYIDRVSNGDGSLAEFYNFCFSLTECEYVMK
                     VDAHYIFSAYGIDILQKQIAKKYDGVVFRGVEIFGKWMSNELFLYRRSLGLKYIDGEL
                     YERLVWSKKNTHIRTIIKPLYLHVKRLAYAKYLYNAKGAIKMKYNK"
     gene            2338..3135
                     /gene="wclO"
     CDS             2338..3135
                     /gene="wclO"
                     /note="glycosyltransferase"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="ADV17632.1"
                     /translation="MKNKNISIIIPTYNSSEILEKNLSIVSNYKQCEIFVIDDGSRSE
                     EAYKNKLMCQRFKCNYKYTSNHGPSHARHVGLLLSKTDYCFFLDSDDYVSELALNYGV
                     DYLLSNKNIDAVVFKSEYVKDLIPFTFDEIKDNCIIKRYKKGFVRECIECMGYPKMLT
                     IGWNQSNTLYRTNKLINFYNVRYLTWGEDIPLKLSLSSGINFVSINMPHASQIKISYG
                     RGYKYTFKQIFELAFEIFKTSKRYYALFLSFLIIIRYTPSYIYKKIK"
     gene            3162..3845
                     /gene="wclP"
     CDS             3162..3845
                     /gene="wclP"
                     /note="glycosyltransferase"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="ADV17633.1"
                     /translation="MVKETIDFCIISLVQHAERRERLINEMAKYKVQCRVSNAIDGRK
                     LLADEYFSLFKANSSKLFGRGFLTPSELGCFLSHRKALSEFIMSGKQWLVMLEDDVTP
                     NDNVRELLGVIHSFNESSIYVLGGQDGLKSFSRVVMGRERDKEKVRKVLLGTYRWMYR
                     TCCYCIDRKGAKNIMKLMNEQRFFPDDWSFIMKNANLKNFFYGNYFTHPVDLSSSSIE
                     AERIFIAKK"
     gene            3842..4924
                     /gene="wzy"
     CDS             3842..4924
                     /gene="wzy"
                     /note="polymerase"
                     /codon_start=1
                     /transl_table=11
                     /product="Wzy"
                     /protein_id="ADV17634.1"
                     /translation="MIYIIINTLTTIFLYLYSSYKYTPLSRLFIGGMCIFLIALLPAF
                     QYGVGTDYFSYQNIYNNANVLDTFYQNKEYLFYAYVKFFQFLGGGFKTFVIYTSLLQS
                     LLIFIIITQMCKNYGQSIIIIFFLFWTVTNLLHTQMNIIRASFAIYIFIISMLFKFRG
                     KIIICFALMIIAIGFHRSALLGLCFALIPLKTYYFAYNHVVKFYFLSFLLFVTPFLHQ
                     VVFYIVQELFPYYTHYLFSFDENAVSFWNVATKIYWLPFGLFFIYLIKCNAIFIKGCE
                     RGLIGLWILTGNVYLLILNFDFVSRVNFYFVFFYVIPIAYVFRYFIRNKNVILLYISV
                     LYCFIPYLLKVTLFPIAEFYYKTYLF"
     gene            4934..5692
                     /gene="wclQ"
     CDS             4934..5692
                     /gene="wclQ"
                     /note="glycosyltransferase"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="ADV17635.1"
                     /translation="MVRCMNIETVSIIMPAYNAEKTIRNSILSILKQSYSNFRLYVIN
                     DSSTDLTENIVKSINDERIVYLVNDCGKGVSSARNVGIAASCGKFIAFCDSDDIWFEK
                     KLEEQLKYLNDGYAVVCSNYEVININNNNLTERKMAKLITYKNMLHSNCIGNLTGIYN
                     ASIIGKVYQKDIGHEDYLMWLTIVKKTNLVYCVQKNLARYTVSETGLSSNKAIAALWQ
                     WNIYRNELGFSMFKSLTLFIIYAFKAFSKRFYLN"
BASE COUNT     1929 a    716 c   1101 g   2255 t
ORIGIN
        1 attggtagct gtaagccaag ggcggtagcg tcggtatggc agccaagcaa cagatcggcg
       61 tcgtcggtat ggcagtgcca ttggtagctg taagccaagg gcggtagcgt cggtatggca
      121 gcgccaagca acagatcggc gtcgtcggta tgacagtgct attggtagct gtaagccaag
      181 ggcggtagct ttgttaaaaa taataatcaa tacatatttg atttaagagt gctgttgcat
      241 ttcggattgg tatttgatac gaaaattatc agtcaaataa ataaaaagag tgattaatgt
      301 tcaaagtaaa agctatattc ttattaagaa taataggtgc tatatttgca ctattggtaa
      361 gtataatcat ttccaggata ctgacaattg atgaggcagg taatgttttt tttctgttat
      421 caataacagg agtgattgct tccttatcaa caatggggca aaataatcta atattaaaga
      481 aatgtgcatc tattaatttt actataaaag ccaaaagtaa tttttttaat aattgtataa
      541 taagaagtgt tgtgtttggt cttcttttat cgattatctt aattccagta atatattatt
      601 tctccaataa tcaaatatta tattctgctt ggtatgtagt acttttgctg attgtttttt
      661 cttcggtaaa tattttatta tactcttata ttcaatctca agggaaagta acgctcagta
      721 tcgttataca atatattttc caacctttaa tattcatgtt ttttgtgttt ttttgctttc
      781 tttgtgctaa ggcaagtggt ttttcggtat cattatcata tttggtatct gtagtacttg
      841 tcggtagtgg tgggttagtg tatgtatatc gctgcgaagc agaagaggaa aaaacagatt
      901 gtaaaaaggc agcgttagtt ccttttaaat ttcgggagtt atcagagtat tttataggta
      961 attcgttagg gatgataatt attcaatctt atgtggtgtt atctggttta ttattaccat
     1021 caagtgatgt agcaataatt gcagtatctg atagaatatc gttaattgta aatctgctcg
     1081 cgatgtcaat aagtgctata cttgctccta ggattgcaag cttatatagt caaggtaaaa
     1141 tgtatgacat taaggttctg actagaaaag ctatagtatt tataacaata ccatgtgttt
     1201 ttcttcttgt tatttttcct tttatttctg gttttttatt atctattttt ggcgcagagt
     1261 atcgtaatgc tggtgaggtt ttactgattt tagtattagc gcaaattatt aatgctgctt
     1321 tatgtcctat atatgtcttc ttaaatatga gcgataagca ggggtttatt agtaagttgc
     1381 atatatatat gttgattcct gcacttggac tatcttttta tttaacgcat ttttttggaa
     1441 ttatcggaat agcgatatcc aaattaatag ttgtagcatt gatcaattta attccattga
     1501 tttatagtat ttttttattc aatcgggtaa caaaatgaga gtattatatt cattcattaa
     1561 acgaatgatt ctgtcgattc attattattt gttttcgatg gcttttttat cttttaatgt
     1621 caagaaaaga tatgctgatc gattagagtt cgataattac gtttccacta aattaaaaaa
     1681 acaagttgaa aataaaaaga agctacctag tgttgctgca atttacaggg taaaaaacgg
     1741 ggctgaatat atagaggcct ctatattatc tatatcaagt tttgctacac aaataattgt
     1801 agttgacaat aattccatgg ataacacaaa aaatattgtg gaaaaattgt cgaatgaatt
     1861 aagagatgtt tgcgatataa agcttttttc ctataataaa aagcttgcca ttgccggaag
     1921 tggatatatt gatcgggtca gtaatggtga tggttcgtta gctgaatttt ataatttttg
     1981 tttttcttta actgagtgtg aatatgtaat gaaagttgat gctcactata tattctcagc
     2041 atatggtatt gatattttac agaagcaaat agctaagaaa tatgatggtg tggtttttag
     2101 gggagttgag atatttggca aatggatgag taatgaatta ttcttatatc gccgttcatt
     2161 agggcttaaa tatattgatg gagaattgta tgagcgttta gtatggagca aaaaaaatac
     2221 tcatataaga accattatca agccacttta tttacatgtc aagcgattag catacgctaa
     2281 atacctttat aatgctaaag gtgctattaa aatgaaatat aataagtagg gtgttggatg
     2341 aaaaataaaa atatatcaat cattattcca acatataatt caagtgaaat cttagaaaaa
     2401 aacctatcga tagtttctaa ttataaacaa tgtgaaatat ttgtaattga tgatggctct
     2461 agatcagagg aagcatataa aaataaatta atgtgtcaaa gatttaagtg taattataag
     2521 tacacttcca atcatggtcc atcacatgcg aggcatgtag gtttattatt atcaaagact
     2581 gattattgtt tttttttaga tagtgatgat tatgtgtctg aattggcgct taactatgga
     2641 gttgattact tattgtctaa taaaaacatc gatgctgtag tttttaaaag tgagtacgtt
     2701 aaagatttaa ttccatttac gtttgatgag ataaaggata actgcattat aaagagatat
     2761 aaaaagggat ttgtaagaga gtgtatagaa tgtatgggat atccaaaaat gttgacaatt
     2821 ggttggaacc aatctaatac gctatataga acaaataaat taattaactt ttacaatgtg
     2881 cgatacttga cttggggaga ggatattcct ttaaagttaa gtttatcttc tggtataaat
     2941 tttgtgtcga ttaacatgcc tcatgcatcc cagattaaga tatcttatgg ccgtgggtat
     3001 aaatatactt tcaagcaaat ttttgaactt gcattcgaga tttttaaaac ctcaaagagg
     3061 tattatgcct tatttttaag ctttttaata atcatacgat atacaccttc ttatatttat
     3121 aaaaaaatca aatgatttaa ttttagtagg ggttgtaaaa gatggtaaaa gaaactattg
     3181 atttttgcat aatatcatta gttcaacatg ctgaacgacg ggagcgatta ataaatgaaa
     3241 tggctaagta taaagtacaa tgtcgggtct ctaatgctat tgacggcagg aaattgttag
     3301 cagatgagta tttttctttg ttcaaagcta attcatcaaa attatttgga agggggtttc
     3361 ttactccttc tgaactcggc tgttttttaa gtcatagaaa agctctatca gagtttatta
     3421 tgagcggtaa acaatggctt gttatgttgg aggatgatgt cactcctaat gataatgtac
     3481 gggaattact tggtgtaata cattcattta atgaaagtag tatatatgta ttgggtgggc
     3541 aggatggact taaaagtttt tctcgtgttg taatggggag agaaagagat aaagagaagg
     3601 tgagaaaagt tctcttgggc acttatcgtt ggatgtacag gacatgttgc tattgtattg
     3661 atcgaaaagg tgcaaaaaat attatgaagt taatgaatga acaacgtttt tttcctgatg
     3721 attggagctt tattatgaaa aatgcaaatt tgaaaaactt cttttatggt aattacttta
     3781 ctcatccagt tgatttaagc tcaagttcta tcgaagctga acgtatattt atagcaaaaa
     3841 aatgatatat attataataa atactctcac gactatattt ttatacttat atagtagtta
     3901 taagtatacc cccttaagtc gactgtttat tggtggcatg tgtatttttt taatagcact
     3961 gttgcccgca ttccagtatg gtgtcggtac tgattatttt agctatcaaa atatatataa
     4021 taatgccaat gtgctagata ctttttatca aaataaagaa tacttattct atgcatatgt
     4081 gaaatttttt caatttttag gggggggatt taaaactttt gttatctata cgtctttatt
     4141 gcaatcatta ttaatattta ttattattac tcagatgtgt aaaaattatg gtcaatcgat
     4201 tatcataata tttttccttt tctggactgt gacaaattta ttacacactc agatgaatat
     4261 aataagggct tcgtttgcta tatatatatt tataatatcc atgcttttta agtttagagg
     4321 taaaataatt atttgttttg ccttaatgat tattgcaatt ggatttcatc gttcagcatt
     4381 attagggttg tgttttgcat taattccctt aaaaacatat tactttgcat ataatcatgt
     4441 tgttaaattt tattttttat cttttttgtt atttgttacc ccatttttac atcaggtggt
     4501 gttttatatt gttcaggagt tgtttccata ttatacacat tatctatttt catttgatga
     4561 aaatgcagtg agcttttgga atgtggctac aaaaatatac tggcttccgt ttgggttatt
     4621 ttttatatat ttaattaaat gtaatgctat ttttattaag ggttgtgagc gtggtttgat
     4681 tggtttgtgg atattaactg ggaatgttta tttattaatt cttaattttg attttgtttc
     4741 cagagttaat ttttattttg tgtttttcta tgtaattcct attgcatatg tttttcgtta
     4801 ctttattaga aataagaatg ttattttatt atatattagt gtgctatatt gttttatacc
     4861 gtatttatta aaagttactt tgtttcctat agctgaattt tattataaaa cttatctttt
     4921 ttaagatctt tatatggtaa gatgtatgaa tatcgaaaca gtatctatta taatgccagc
     4981 ttataatgct gagaaaacta ttagaaacag catcctctca atattgaaac aatcatatag
     5041 caattttcga ttatatgtga ttaatgatag ttcaacagat ttaactgaaa atatagtgaa
     5101 atcaattaat gatgaacgta tagtttactt agtcaatgat tgtggtaagg gggtttcatc
     5161 ggctagaaat gttggtattg cggcaagttg cgggaagttc atagcatttt gcgacagcga
     5221 tgatatttgg tttgagaaaa agcttgagga acaattgaag tatttaaacg acggatatgc
     5281 ggttgtttgc tctaattatg aagttataaa tattaataat aataatttaa cagaaagaaa
     5341 aatggcaaag ttaataacat ataaaaatat gttacactcg aattgtatag gcaatttaac
     5401 aggaatttac aatgcttcta taataggtaa ggtttatcag aaggatattg gtcatgaaga
     5461 ttatttaatg tggttgacta ttgtaaagaa aacaaattta gtgtattgcg tccaaaaaaa
     5521 ccttgcaagg tacacggtat ctgaaacagg attgtcttct aataaagcta ttgctgctct
     5581 atggcaatgg aatatatata gaaatgagct gggtttttct atgtttaaat ctttaactct
     5641 ttttattatc tatgctttta aagctttttc taaaaggttt tatttaaatt aagcatatat
     5701 attatggtgt atggttttat gataattgat ttatctcttt gaatacagga agaatgttat
     5761 taaaataacc atcaatatag acgttgtgct taaatatgtt aatttggcga gcatatggaa
     5821 atataaaaaa tttatgccca gatgaaatgc aacacattgt tttgttggag ttatattata
     5881 taatgtttta agttataaca tctagaccac atttcaagcc gcgctctcgt cgcgcggtga
     5941 ccacacctga caggagtatg taatgtccaa gcaacagatc ggcgtcgtcg gtatggcagt
     6001 g
//
