LOCUS       JX975342                7071 bp    DNA     linear   BCT 27-AUG-2013
DEFINITION  Salmonella enterica strain G1467 O antigen gene cluster, complete
            sequence.
ACCESSION   JX975342
VERSION     JX975342.1
KEYWORDS    .
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 7071)
  AUTHORS   Liu,B., Knirel,Y.A., Feng,L., Perepelov,A.V., Senchenkova,S.N.,
            Reeves,P.R. and Wang,L.
  TITLE     Structural diversity in Salmonella O antigens and its genetic basis
  JOURNAL   FEMS Microbiol. Rev. (2013) In press
   PUBMED   23848592
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 7071)
  AUTHORS   Liu,B., Knirel,Y.A., Feng,L., Perepelov,A.V., Reeves,P.R. and
            Wang,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2012) TEDA School of Biological Sciences and
            Biotechnology, Nankai University, 23 Hongda Street, TEDA, Tianjin
            300457, P.R. China
COMMENT     ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..7071
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="G1467"
                     /db_xref="taxon:28901"
                     /note="serogroup: O44"
     misc_feature    1..7071
                     /note="O antigen gene cluster"
     gene            127..1260
                     /gene="wzx"
     CDS             127..1260
                     /gene="wzx"
                     /note="Wzx"
                     /codon_start=1
                     /transl_table=11
                     /product="flippase"
                     /protein_id="AFW04826.1"
                     /translation="MKRIEKVFGPVYRNISWLIFEKLITLSLVFYSEGIITRALSVEQ
                     YGQWIYALNLVTLISSVALIAGAEITIPALSRNKKIISEIITSAFVIRMLLAMVAYAL
                     VNIYTYFFISDPFLKKITYIVSIIIIFNEPFSIIINYYQSIVNIKSIAFVRMLSLLGR
                     VVFIIFWVNLLSSDMIAWSRVIEFILLTCFLIFLWYKKSFIFRIDLQVLKKIFLRGLY
                     FWPSLILMYVYLRLDRFYVEKYFSFEVLAIYGIAIQLMEQAFMLIRMVLQSIAPIYIY
                     KKLPRDEIIRNLVYLMFGLVIMSIIIALLGQLLLPKIVIFIFGSGYSNAALLTVKMLP
                     ALIFFCIDNVLMQYLFRERTSKLLFIKWAGGVIILTIIYYLFF"
     gene            1356..2171
                     /gene="wdaX"
     CDS             1356..2171
                     /gene="wdaX"
                     /note="WdaX"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="AFW04827.1"
                     /translation="MSDISHIIIFTPTYNRAHTLTRCYESIVNQNYKKLTWLVIDDGS
                     TDNTRTLIEKFICQDQIKIVYHYQKNAGKQGAWNKAVSLSQEYDAFLCLDSDDILLEN
                     CISHVSSYFYLLKESDVIGLRCLAIRQSTNRPDSLYNLERVEKKSWHDELFSRQLGER
                     SDIFDPKKLINYLYPVDETIKFVPEIWFYAASAPLYKYIYIPVPLTKFYDKHCHLRLS
                     KVSFSQHIHGHKKAREIILRTVPLKVVYKNPVFYLKNLIRYLQCLYYIFIRNK"
     gene            2181..3314
                     /gene="wzy"
     CDS             2181..3314
                     /gene="wzy"
                     /note="Wzy"
                     /codon_start=1
                     /transl_table=11
                     /product="polymerase"
                     /protein_id="AFW04828.1"
                     /translation="MIINNILLMALLAVCTIDLPSFIVVYGLQLYILPCIVLMCLIRG
                     GVFPLKFFFVASFLSLIIIIITVIQETYTPYPDLLWSYTARLIYWIMVFTLLIPFIQK
                     IPLIDLIKIIRRWILLYSTFLFIQFIAFYLFHIIVDYSLIIGGQESRILNEVGLRASG
                     LTAEPSIYSGIMISLLILLYLMTGKNNIITYIGLISILCTLSTLGIFLVIIYLAITNL
                     YRIKISRIVFFISLSIAIIFILWDFILKRIELFLQGGDVSNNIKIMVIDNLFNNESLF
                     LLGYGLVGYSDKAPPYYQALYDLTLFGNLCVIFGIPIGLMLSITVFLFTLNMRICFEK
                     KILIILSFIKITIPNYIFFYFFLVLLYVITNKISVRYHNRREV"
     gene            3311..4387
                     /gene="wdaY"
     CDS             3311..4387
                     /gene="wdaY"
                     /note="WdaY"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="AFW04829.1"
                     /translation="MKTICFFINDLSNSGGTERITSIAANNLSLKGYKVFILTIKDCI
                     SPFFKINNSVEVVNISSKNNVASKKISIIKNLRRIIKQNGIDVLINVDAILTLYSIPS
                     LFGIKCINICWEQFNIKANLGLKSRDVSRLLAMLCCEKCIVLTRGDKKAWLRKKICNS
                     SKIKVIYNPSSYPILDNEKKRNEQIVLAVGRLTKQKGFDLLLRAWGGITKKEGWRLKI
                     VGGGEELNSLKELAEQLNIHDSVIFESPTSDIVSHYKNADIFCLSSRFEGIGLVLLEA
                     QSFGLPSLSFNCDYGPAEILNNNNGYLIPCFDIAQYSEKLSKLMQDSNLRTKMSCNAK
                     AQAKLFTVERFTDSWLCVLDEVLL"
     gene            4384..5451
                     /gene="wdaZ"
     CDS             4384..5451
                     /gene="wdaZ"
                     /note="WdaZ"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="AFW04830.1"
                     /translation="MNIIHVIPKAKVGGVETAVFSSFHDILNHGYCFRIVSIEKDDVN
                     YSKENIDITSLNSSFFNPLGFLRFLKFMKDNKPDLVVFSLWKSALFGLVWQLFYNKRD
                     AVKTAFIIHNTKFSHILDKIITKIAVKKFDAIYFDSHETKQLFEKKENIKGEVLSFIT
                     SKITPKQFSLDIRNINMVYIGRIHKSKNLKDSIRFVKKLNELGVCANFDIYGPDEGEL
                     ANITSTIESFGLSSKVKYKGVLKYNEVDDVLKKYDIYLQLSLYEGMAMSVVTALQAGL
                     IALVSAVGEIPNYIEDGVNGVLFDISCLDDDIYIEKIASDFQRLINENKLIKMHEIAK
                     LTFSNKTLYSEDYINKIVKQA"
     gene            5480..6574
                     /gene="wdaW"
     CDS             5480..6574
                     /gene="wdaW"
                     /note="WdaW"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="AFW04831.1"
                     /translation="MKIVHVQLLPLLSGVQRVTLNEVENDIDNEHIIICSSEGPLTQK
                     LKELHIQYFCVRELCREISIINDLKAIKKIYQILRMTNADVVHTHSSKTGVIGRIAAK
                     IAGIKRVIHTVHGFSFPSAKSKRAYLLYYILEYIVKYFTDALIVLNEKDRRIACQKLH
                     YAPKNVYLIPNGVDVSKFTPDELCHKYSTKLLKVIMVGRLWVQKDPSTLLKAVIDLLE
                     RNINIELSFVGDGELRSVLILQAEKYTNKIKFLGWRDDIENILPEYDVFVLPSLWEGM
                     PLAILEAMSCGLACVVTNIPGNNDLIKDKHNGYLFDCGDAKRLSELLEYYYNNRNVLI
                     EHSNLNRQIVLDKYTLLKRNSLIKNVYVKN"
BASE COUNT     2395 a    923 c   1241 g   2512 t
ORIGIN
        1 attggtagct gtaagccaag ggcggtagcg tcggtatggc agccaagcaa cagatcggcg
       61 tcgtcggtgt ggcagtgcta ttggtagctg taagccaagg gcggtagcgt ggtacacttt
      121 acacacatga aaagaattga aaaagttttt gggcccgttt atagaaatat atcatggctt
      181 atatttgaaa aactaattac gctcagctta gttttctatt cagaaggaat tattacgaga
      241 gcgctttctg ttgagcaata cggtcaatgg atatatgctt tgaatttagt tacacttata
      301 tcttcagttg ccttaatagc tggagcagag atcactattc ctgcgctttc acgaaataag
      361 aagattataa gtgaaattat cacatctgcg tttgtgatta ggatgctatt agcaatggtt
      421 gcttatgcat tagttaatat atatacttat ttttttatta gtgatccatt tctcaaaaaa
      481 attacctata tagtttctat cataattata tttaacgaac cattttcgat aataataaac
      541 tattatcagt ctatagttaa tatcaaatcg attgcgttcg ttagaatgtt atcgctatta
      601 gggcgtgttg tatttatcat tttttgggtt aacttgctat catctgatat gattgcatgg
      661 tcgagggtaa ttgaatttat actgcttaca tgttttttga tatttttatg gtataaaaaa
      721 tcttttattt ttcgcataga tctacaggtt ttgaagaaaa tatttctccg aggattatac
      781 ttttggccgt cattaatatt aatgtatgta tatttacggc ttgatagatt ttatgtagag
      841 aaatattttt catttgaggt acttgcgata tatgggattg caatccaatt gatggagcaa
      901 gcttttatgc taataagaat ggtattgcaa tcaattgcac cgatttatat ttataaaaaa
      961 ctcccgagag atgaaattat aaggaattta gtgtatttga tgtttggcct tgtaataatg
     1021 agtataatta ttgcgttatt aggacaatta ttgttaccta aaatagttat ttttatcttt
     1081 ggtagtggtt atagtaatgc tgctttatta actgtgaaaa tgttgccagc tttaatattt
     1141 ttttgtatag ataatgtatt aatgcaatat ttatttagag aaagaacaag taaacttctt
     1201 tttattaaat gggcaggagg agtgattatt ttaactataa tatattattt gtttttttga
     1261 tatttttcat agtaaaaatc tatactttgt atataatata aattattttt tgatgtcatt
     1321 aattaccttt tttcttttta tgaggaaaat tagaagtgtc tgatattagt catataatta
     1381 tttttactcc aacatacaac cgcgcccata ctctaactcg ttgctatgaa agtatagtta
     1441 accaaaatta taaaaaatta acgtggctcg ttatcgatga tggttctact gataatacca
     1501 gaaccttaat tgagaaattt atttgtcaag atcaaataaa aatagtgtac cactatcaga
     1561 aaaatgcagg aaaacagggg gcatggaata aagctgtaag cttatcacaa gagtacgatg
     1621 ccttcttgtg cttagattct gatgatattc ttcttgaaaa ttgtatatca catgtgtctt
     1681 catattttta tctccttaaa gaaagtgacg ttattgggct cagatgctta gcaattcgac
     1741 aatctacaaa tagacctgat agtctgtata atttagagcg agttgaaaaa aaatcatggc
     1801 acgatgaatt atttagcaga cagcttggag aaagatctga tatatttgac cctaaaaaat
     1861 taattaatta tttatatcca gtagatgaaa cgataaaatt tgttcctgaa atatggtttt
     1921 atgcagcaag tgctccgtta tataaatata tatatatccc agtgccattg actaagtttt
     1981 atgataaaca ttgccatctt agattaagta aggtaagttt ttctcagcat atacatgggc
     2041 ataagaaggc tcgtgaaata atattgcgta cagttccttt aaaagtagtt tataaaaacc
     2101 ctgtttttta cttaaagaat ttaatacggt accttcaatg tttatattat attttcataa
     2161 gaaataaata agatattaat atgataataa ataatatatt attaatggca ttattagctg
     2221 tatgtactat agacctacct tcctttatag tagtttatgg cttgcaattg tatattctgc
     2281 cgtgtattgt actaatgtgt ctaataagag ggggagtgtt tccattaaaa ttttttttcg
     2341 tagcatcttt tctatcatta ataataatta ttattaccgt aatccaggag acttatactc
     2401 cctatcctga tttactatgg agttatactg ctagattaat ttattggatt atggttttta
     2461 cactgcttat tccatttata caaaaaatac cactgataga tttaataaaa ataataagaa
     2521 gatggatatt gttatattct acattcttat ttatacagtt tatagcattt tatctatttc
     2581 atattatagt tgattactca ttaattattg gtggtcagga atcaagaata ctaaacgaag
     2641 taggtttaag agcttccggc ttgactgctg aaccctcaat ttattccggg ataatgattt
     2701 cactattgat actattgtat ctcatgactg ggaaaaataa tataataaca tacatagggt
     2761 taataagtat attatgtact ttatctactt taggaatttt tttggttatt atttatttag
     2821 ctataacaaa tttatatcga attaaaattt ctagaatagt cttttttata tccctttcaa
     2881 ttgcaattat ttttatttta tgggatttta ttttaaaaag aatagaactt tttctgcagg
     2941 gcggggatgt tagtaataat ataaaaatca tggtcattga taatctgttt aataatgagt
     3001 ctttattttt gcttggatat gggttggttg gttatagtga taaagctccc ccatattatc
     3061 aggctcttta tgacctaact ttatttggga atttatgtgt tatctttggt attcctattg
     3121 gtcttatgtt atctataact gtttttttat ttacgttgaa tatgaggatt tgtttcgaga
     3181 agaaaatact gataattctt tcttttataa aaatcactat cccaaactat atattttttt
     3241 attttttctt ggttttacta tatgtcataa ctaataaaat atcggtaaga tatcacaata
     3301 gaagagaagt atgaagacga tttgtttttt tataaatgat ttaagtaact caggcggtac
     3361 agagcgtatt acttcaatag ccgcaaataa tctaagcctg aagggatata aggtttttat
     3421 tctcacaata aaagactgta tatcgccttt ttttaaaatt aataattctg tcgaagttgt
     3481 taacatttct tccaaaaata atgttgcaag taaaaaaata tctataatta aaaatttaag
     3541 aagaataatt aaacagaacg gaatagatgt acttattaat gttgatgcta tactaacact
     3601 ttactctatt ccatctttat ttggtatcaa atgtataaat atttgttggg aacaatttaa
     3661 tataaaagca aacttgggtc ttaaaagtag agatgtaagt agattattag caatgctctg
     3721 ttgcgaaaaa tgtattgtgc ttactcgtgg ggataaaaaa gcttggctta gaaaaaaaat
     3781 ctgtaatagt agtaaaatta aagtaatata taatccatct agctatccta ttttagataa
     3841 tgaaaaaaaa cgaaatgagc aaatagtcct tgctgttggg cgattgacaa agcaaaaagg
     3901 ttttgatcta ttactgagag cgtggggggg tataactaaa aaagaaggat ggcgcttaaa
     3961 aatagtcggc gggggagaag aactgaacag cttaaaagaa ttagctgaac agttaaatat
     4021 acatgattcg gtcattttcg aatcaccaac ttcagacatt gtgtcacact acaaaaatgc
     4081 tgatattttt tgcttatcct cacgttttga aggtattggc ctagttttat tggaggcaca
     4141 atcttttgga ttaccctcac tttcttttaa ttgcgattat ggtcctgctg aaatattaaa
     4201 taataataat ggatatttga ttccatgttt tgatatagct cagtactctg aaaagttaag
     4261 taaattaatg caggatagta accttcgaac aaaaatgtca tgtaatgcta aagcccaagc
     4321 taaattattt actgtagaga gatttacaga tagttggtta tgtgtactgg atgaggtttt
     4381 actatgaata ttattcacgt tattccaaag gctaaagttg gtggtgtcga aactgcagtt
     4441 tttagttcat ttcatgatat tttgaatcat ggctattgct ttcgtatagt ttctatagaa
     4501 aaggatgatg tcaattattc taaagaaaac atagatatta cgagtctaaa ttcatcattt
     4561 tttaatccgt tgggtttctt acgattccta aaatttatga aagataataa acctgattta
     4621 gttgtttttt cactatggaa aagtgcatta tttggtcttg tatggcagtt attttacaat
     4681 aaacgagatg cagttaaaac tgcttttata attcacaata caaaattttc tcatattctt
     4741 gataaaataa taacaaaaat agctgttaaa aagtttgatg ctatctattt tgattcacat
     4801 gaaacaaagc aactttttga aaaaaaagaa aatataaaag gtgaggttct tagtttcata
     4861 acatcaaaaa tcactcctaa acaatttagt ttagatatta gaaatattaa tatggtttat
     4921 attgggagga tccataaatc taaaaatcta aaagatagta ttagatttgt aaaaaaacta
     4981 aatgagttag gtgtttgtgc taattttgat atatatgggc cagatgaagg agaactagct
     5041 aatataacat ctacaatcga gtcatttggt ttatcctcaa aggtaaagta taaaggtgtt
     5101 ctgaaatata atgaggttga tgacgtttta aaaaaatacg acatttattt gcagctaagt
     5161 ttatatgaag gtatggctat gtcagtagta acagcacttc aagctggcct tatagcatta
     5221 gtttccgctg taggtgaaat tccaaactat atagaagatg gggttaacgg agtgcttttt
     5281 gatatttctt gcttggatga tgatatttat atagaaaaaa tagcgagtga tttccagcga
     5341 ttaatcaatg aaaataaatt gataaaaatg catgagatcg ctaaattaac attctctaat
     5401 aaaacattat actcagaaga ctatattaat aaaattgtaa agcaagcata attattttaa
     5461 tttgaatgaa ataatatata tgaaaatagt acatgtacag ttgcttccgc tgttaagtgg
     5521 tgtccaaaga gttacactta atgaagtgga aaatgatata gataatgaac atattattat
     5581 atgctcttct gaagggccat taacacaaaa gttaaaagaa ctacatattc aatatttttg
     5641 cgttagagaa ttatgtcgag agatctcaat tattaatgat ttaaaagcga ttaagaaaat
     5701 ttatcaaata ttaagaatga ctaatgctga tgtagtgcat actcactcat caaaaactgg
     5761 agtgatagga agaatagccg ctaagattgc aggaataaaa agagttattc atacagttca
     5821 tgggttttct tttccttcag caaaatctaa aagggcttat cttttatatt acatcttaga
     5881 gtatattgta aaatatttta cggatgcttt aattgtatta aacgagaaag atagaaggat
     5941 tgcttgtcaa aaactacatt acgcacctaa gaatgtttat ttgataccca acggagtaga
     6001 tgtcagtaaa tttactccag atgagttatg ccataaatat agtacgaaat tattaaaggt
     6061 aattatggtc gggcgtttat gggtgcaaaa agatccatcc actttattaa aagctgtaat
     6121 tgacttattg gagagaaata ttaacattga gctttccttt gtgggggatg gtgagctccg
     6181 ttcagtacta atattacagg ctgagaagta tacaaataaa ataaagtttc ttggatggag
     6241 agatgacata gaaaatattc tgcctgagta tgatgttttt gttttaccat ctttatggga
     6301 aggaatgcca ttggcaattc ttgaagccat gagctgtggt ttagcatgtg tagtgacgaa
     6361 tataccaggt aataatgatt taataaaaga taagcataat ggttatttat ttgactgcgg
     6421 agatgcaaag agattgtcag aactcttaga gtattattat aataacagaa atgttcttat
     6481 tgaacattct aatctaaata gacaaatagt acttgataag tatactcttc taaaacgaaa
     6541 ttctttaata aagaatgtat atgttaaaaa ttaatacatg ctttgattat aagtgcttga
     6601 gatagcagat cacttagcga gagctcagtc tggtttatac gatctcatca atcgtagaat
     6661 ctcctaaacc accagccgga gtgagcgatg ccgatcatag cccaattccc aagattgaat
     6721 aataccagat gcagaaaatg attcataaac aaaggcgacg ctcgcggctt actgtcatac
     6781 tgatgctaca tcgtggtttt agcttgtcat gttgcaagaa tgttatgctg cgctggatta
     6841 actggttcac actgtgtggt gctgaaggcc taaagtcatt gctacctcac tttatgaata
     6901 ctgttagcta tcccttggcg gaaaatatag gatggctaaa gtatagcggt attagtatca
     6961 gttagttaga attgaagtaa aattcaagcc gcgctctcgt cgcgcggtga ccacacctga
     7021 caggagtatg taatggccaa gcaacagatc ggcgtcgtcg gtatggcagt g
//
