LOCUS       JX975338                7086 bp    DNA     linear   BCT 27-AUG-2013
DEFINITION  Salmonella enterica strain G1441 O antigen gene cluster, complete
            sequence.
ACCESSION   JX975338
VERSION     JX975338.1
KEYWORDS    .
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 7086)
  AUTHORS   Liu,B., Knirel,Y.A., Feng,L., Perepelov,A.V., Senchenkova,S.N.,
            Reeves,P.R. and Wang,L.
  TITLE     Structural diversity in Salmonella O antigens and its genetic basis
  JOURNAL   FEMS Microbiol. Rev. (2013) In press
   PUBMED   23848592
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 7086)
  AUTHORS   Liu,B., Knirel,Y.A., Feng,L., Perepelov,A.V., Reeves,P.R. and
            Wang,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2012) TEDA School of Biological Sciences and
            Biotechnology, Nankai University, 23 Hongda Street, TEDA, Tianjin
            300457, P.R. China
COMMENT     ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..7086
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="G1441"
                     /db_xref="taxon:28901"
                     /note="serogroup: O52"
     misc_feature    1..7086
                     /note="O antigen gene cluster"
     gene            34..864
                     /gene="wdbM"
     CDS             34..864
                     /gene="wdbM"
                     /note="WdbM"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="AFW04787.1"
                     /translation="MKSMKCQNAKIAVIMSIYINDRLEDFKEAFNSIINQTYSNFVFF
                     IYADGEINEEIEKYLLSVKSNKVVFLRGTCNKGLAYALNKLITLVIELNDFKYIARMD
                     ADDISELDRFQQQVDFFDKNPDVDVVGGLCQEFGGESARKKCKVYLDDYTIKFNLFKK
                     CPFVHPTVMFKASVFNDGVRYPEDRPLTEDICLWFELAYLNKRFANIDSVLLRYRINE
                     NTLERRRGLKKAITEFTIRLFYVRRLKMISWRNIILILTHFFVRVLPSPLFKLIHKIN
                     "
     gene            866..2632
                     /gene="wdbN"
     CDS             866..2632
                     /gene="wdbN"
                     /note="WdbN"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="AFW04788.1"
                     /translation="MDKQIYTYDIWDTILKRNCHPAYTLEFTIYWLLIYIGKNEHYEH
                     VCNALKTKERELFNIKKEYYIHDLIVNILQDNKLIEQSEKKDIIELWNQIYLFVEKKC
                     TYKNDYVINIIKNDMGEKFFISDFYTDSDFIKSILKHHSVEISKGITSAEYESSKHTG
                     LLYEKLEVLNGKKWIHTGDNFLADVKMAKAWGAETRYIKNKHLKRVTYKPGNDYERLA
                     FILLSFSLFILTMAKKECCNKIYFFTREGVFFKTTFDLLIKELPSLFQSLKTEILPIS
                     RVASLVLKFNSFDEFWGFKDALHQYGYNTSVFLSFFNFQELYPELVNKYEDVRDIFKN
                     RNDPLVKELIINIENKKKRTEKYLEIIGFDIEPSIIVDIGWRGSIQDNLMSRPSNNIR
                     HGCYLGLFKFYDGQSGISKSSIIFDNNINNCNWSKKGVSFMETIFNHTDGSVVDYQHD
                     KPVKKENDIEKNNFNKLAEMQSSIIESYNNLLYLLLTGRINVKDINNLAIRSYKKIVT
                     NPSKDLADFYIDSIQNESFGLDCFIRKDFNITGNDFLHCLLSRGKRNNIRDKLLNNGW
                     RESIIKSSKTSICAKLFSLIIR"
     gene            2636..3508
                     /gene="wdbO"
     CDS             2636..3508
                     /gene="wdbO"
                     /note="WdbO"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="AFW04789.1"
                     /translation="MNISVIICCYNSEKRIVNTLYHLSRCVLSCKVINEVILVDNNSS
                     DKTAEVAMEYWDSINCKDILRIYIEKKPGLAYARKKGLSECKNEIVVFCDDDNWLQPS
                     YFIRLGEHFNNSKIGAVGGRGIPIANVKVPDWFFENLDAYACSEQTSKMLYGASLAIR
                     THLLERFYCDIISEKLKGRTKDSLESGEDNLLCEFIKKEGYILLADNTPFCHFMENNR
                     LEVDYLFKLAESFGKATASIRQNTLLFDFFYLTSKCLFALLRCITKKYKIIYLKREFF
                     FIKGYMNFRIGIKA"
     gene            3505..4569
                     /gene="wzy"
     CDS             3505..4569
                     /gene="wzy"
                     /note="Wzy"
                     /codon_start=1
                     /transl_table=11
                     /product="polymerase"
                     /protein_id="AFW04790.1"
                     /translation="MKGGLIVILWYSGFLFIAATGLTGLQELSSKSILMYIAFLFCFL
                     LGMVLSGVSLYEPKKEMHQQILKRKHNLVIVSIFYLFIIYCFLVALNIYFFNKVDLSS
                     YRQAFFDGSRDNVKFFFGSFGFYFYYFLSLIIYALVPFVVIMNNKKVLFLCFLSLLLY
                     DIIFLSRTGVYYYILSYIVACIIQKKQLKKIIIFIVIALLFSFVISYTRDMQSNIINS
                     IFSSIINYHVAPFILLDNNIISKNVITYHGVGLASLGIYNIIFFPIDVTIMQTINDFR
                     TQLNMFYDLGLKEYLPYNAYYTSLGGVYIDSGFLGCMIVTFFFGFIIVAIEKKAYKSR
                     KYLASTVFFTTLCLESILLQ"
     gene            4630..5655
                     /gene="wdbP"
     CDS             4630..5655
                     /gene="wdbP"
                     /note="WdbP"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="AFW04791.1"
                     /translation="MKIGMVVPSLKNTAPNNLAFSICKYGKKNNIDIDLFYLDKTDNY
                     ALDLDIKAKLLDNRTILDNYDIIHSHGLRPDLINIMANKNIIKVSTIHSFITDDLKNR
                     YGLKGYLIALFWLKLLKKFNSCIAISKSAGNFYIKNNVKCYHIYNGVDFKKFNTNRKR
                     SYSNSEKEIKIVTIAHLEKIKGLEQLLYLAALKKNVHVHIIGEGSHRKKLLDLIIKLG
                     ISERVVLHGYLNNASSYLDDFNVYVQPSLSEGFGIAVIEALAAKIPTVCSDIEVFREL
                     FNSNEVDFFKLNDIESLFNAVTRAAQKSNIEIDRAAISVYKRFSSEVMSLNYIKWYKK
                     LYEEKNY"
     gene            5636..6826
                     /gene="wzx"
     CDS             5636..6826
                     /gene="wzx"
                     /note="Wzx"
                     /codon_start=1
                     /transl_table=11
                     /product="flippase"
                     /protein_id="AFW04792.1"
                     /translation="MKKKITKYLVIFLCYGVNFILPILFFKEISYILSPAVLTSFFFV
                     LALLIYCQYVVEYGLQISLLKKLSNNKLDLSYDISSILELKILLFITCSFFLLIILTY
                     SNDIIFSILIIVLLGNVFSCQFLYQVVDRLHFFYIINTISKIIFIPLIYIDSNYIYLL
                     ICYSLFNVFPNLISFTMFLYNQRIKLVWVPIETIFILAKEKFGYFASNISITLYTNFY
                     QVLLGIISPSYLAAYALSDKIIRGVIAGNYVFIQIIQVQFLNDESKFLDKIEKILVIL
                     FFLGLVESCVIFFGASFFEVYFFPKIPMLSDFLKLMSFLVIIILISNFFAMVYLPCTG
                     NTHFLSKVFITVSIFSVISAPLLIYYYAGYGAISAAILSEMLVLTFCYVFYRKIRYAN
                     NIKY"
BASE COUNT     2456 a    881 c   1173 g   2576 t
ORIGIN
        1 attggtagct gtaagccaag ggcggtagcg tggatgaaaa gtatgaaatg ccaaaacgct
       61 aaaatagcgg tgataatgtc aatttatatt aatgacaggt tggaggattt taaagaggct
      121 tttaatagca tcattaacca aacatattct aactttgttt tcttcattta tgccgatggt
      181 gaaataaatg aagaaataga gaaatatcta ttaagtgtaa agtcaaacaa agttgttttt
      241 cttagaggaa catgtaataa aggtcttgca tatgctttaa acaaactaat aactcttgta
      301 attgagctta acgatttcaa atatattgca cgaatggatg ctgatgacat tagcgaatta
      361 gatagatttc agcagcaggt tgattttttt gataaaaacc cagatgtaga tgttgttggt
      421 ggtttatgtc aagagtttgg aggagaatca gccagaaaaa aatgtaaagt ttatttagat
      481 gactacacta ttaagtttaa cctttttaag aaatgtcctt tcgttcatcc aacagttatg
      541 ttcaaagctt cagtgttcaa tgacggcgtt cgctatccag aagatagacc gttaactgaa
      601 gatatatgtc tatggtttga attagcatac ctaaataaaa gatttgcaaa tattgactca
      661 gttttactca ggtatagaat taatgaaaat accttagagc gacgaagagg cttaaaaaaa
      721 gctattactg agtttactat tagactattt tatgtccgta gactcaaaat gatttcgtgg
      781 agaaatatta ttttaatact aactcatttt ttcgtaagag ttcttccttc tcctttattt
      841 aaattaattc acaaaataaa ttaaaatgga taagcaaatt tatacatatg atatatggga
      901 tacaatttta aaaagaaact gtcatcctgc atatactcta gagtttacaa tttattggct
      961 cctcatatat atagggaaaa atgaacacta tgaacatgtt tgtaatgctc taaagactaa
     1021 agaacgcgaa ctatttaaca ttaaaaaaga atactatatt catgatttaa ttgttaatat
     1081 tttgcaagat aataagctga ttgaacaatc ggaaaaaaaa gatattattg aattatggaa
     1141 ccaaatatat ttgtttgtgg agaaaaaatg cacatataag aatgactacg tcataaatat
     1201 tattaagaat gatatggggg agaagttttt tatatctgat ttttatacag attctgattt
     1261 tataaaaagt attttaaaac atcatagtgt tgaaatatca aaaggaatta catctgctga
     1321 atatgaatcc agcaaacata ctggattgct atatgaaaaa ttagaagtgc ttaatggaaa
     1381 aaaatggata catacaggag ataatttttt agctgatgta aaaatggcta aggcttgggg
     1441 ggctgaaacc agatatataa aaaacaaaca tcttaaaaga gtgacatata aacctggtaa
     1501 tgattatgaa cgactggcat ttatattact ttcatttagt ctctttatat taacgatggc
     1561 taaaaaagaa tgttgtaaca aaatatattt ttttacaagg gaaggggtgt tttttaaaac
     1621 aacttttgac ttgctaataa aagagttacc aagtttattc cagtctttaa aaactgaaat
     1681 attaccgatt agtcgtgttg ctagtttagt attaaagttt aatagttttg atgaattttg
     1741 gggttttaaa gatgcacttc accaatatgg atataatact tcagtttttt tgagtttttt
     1801 taactttcaa gaactctatc ccgagttagt taataaatat gaggatgtca gagacatttt
     1861 taaaaaccga aatgatcctc ttgtaaagga actaataata aatattgaaa ataaaaaaaa
     1921 acgtacagag aaatatctgg agataatagg ctttgatatt gaacctagca taatagttga
     1981 tataggttgg cgaggtagta ttcaagataa tttgatgtcg agaccatcaa ataatattcg
     2041 acatgggtgc tatttaggtt tgtttaagtt ttatgatggg caatcaggga taagtaagtc
     2101 atcaataata tttgataata atattaataa ttgcaattgg tcaaagaaag gggtttcttt
     2161 catggaaaca atatttaacc acacggatgg tagtgttgtg gactatcaac atgataagcc
     2221 cgtaaagaaa gaaaatgata ttgaaaaaaa caattttaat aaattagcgg aaatgcagtc
     2281 atcaataata gaaagttata ataatttgct ttatttgcta ttaacaggca gaattaatgt
     2341 taaagatata aataacttag caattagaag ttataagaaa atcgttacta atccttcaaa
     2401 agatttagct gatttctata tcgacagtat acagaacgaa agttttggat tggattgttt
     2461 cataagaaaa gattttaata ttacgggtaa tgactttttg cattgtttac tctccagagg
     2521 taaaagaaat aatattaggg ataaactttt aaataatgga tggcgtgaat ctattattaa
     2581 gtcatcaaaa acatcgatct gtgcaaaatt attttcacta ataattagat aaaatatgaa
     2641 tatttcagta ataatatgtt gttataactc tgaaaagaga attgttaata cactatacca
     2701 tctttcccga tgtgtcttgt cttgtaaagt cattaatgaa gttatattag ttgataataa
     2761 ctcttctgac aagactgccg aagtggcaat ggagtattgg gacagtatta attgtaagga
     2821 catcttacgg atatatattg aaaaaaaacc agggcttgct tatgcccgaa aaaaaggtct
     2881 gtctgagtgt aaaaatgaaa tagttgtatt ttgtgatgac gataattggt tgcaaccatc
     2941 atattttata agattaggtg agcattttaa taatagcaaa attggtgctg tcggcgggcg
     3001 aggaattcca attgctaatg tcaaagtgcc tgattggttt tttgaaaatt tagatgctta
     3061 tgcttgttca gaacaaactt cgaaaatgtt atatggggct agcttagcaa taagaactca
     3121 tctcttggag cgtttttatt gtgatattat atctgagaaa cttaaaggaa ggacaaaaga
     3181 tagcttagaa tcgggtgagg ataatttact gtgtgagttt atcaaaaaag agggatatat
     3241 attgttggct gataacactc cattctgcca ttttatggaa aacaacaggc tagaggttga
     3301 ttatctcttt aaacttgcag agtcgtttgg gaaagcaact gcttctattc gacaaaatac
     3361 attattattt gatttctttt atttaacatc taaatgtctc tttgctttac taaggtgtat
     3421 aacaaaaaaa tataagataa tatatctaaa aagagaattt ttctttatta aagggtatat
     3481 gaattttaga ataggaataa aggcatgaaa ggcggtctta ttgttattct gtggtattca
     3541 ggctttttat ttattgcagc aacaggttta accgggcttc aggagttaag ttcaaaatct
     3601 atactaatgt atattgcttt tttgttttgc ttccttttag ggatggtact atctggtgta
     3661 tccctttatg aaccgaaaaa ggaaatgcat cagcagattc tcaaaagaaa acataactta
     3721 gtgatagtga gtatattcta tctatttata atatattgtt ttttagttgc attaaatatt
     3781 tattttttca ataaagttga tctttcgtct tataggcagg cattctttga tggctcaaga
     3841 gataatgtaa agttcttttt tggttcattt ggattttatt tttattattt cttaagttta
     3901 atcatttatg cgttagttcc atttgttgtt ataatgaata ataaaaaagt gttattccta
     3961 tgctttctgt cattattgct atatgatata atttttcttt cgagaaccgg agtttattac
     4021 tatatattgt catatatagt ggcatgtatc atccagaaaa agcaattaaa aaaaataatt
     4081 atttttatcg tgattgcatt gctgttttct tttgtaataa gctatactcg cgatatgcaa
     4141 agtaacataa ttaattcaat ttttagctca attattaatt atcacgtagc cccttttatt
     4201 ctattagata acaacataat ttcaaaaaat gtaataacat accatggtgt tggtttagca
     4261 tcacttggta tatataatat tattttcttt cctatagatg taacaataat gcaaactata
     4321 aacgacttta gaactcagtt aaatatgttc tatgatctag gattaaaaga atatttacca
     4381 tataatgctt actacacatc actaggggga gtatacatag atagtggttt tttgggatgc
     4441 atgatagtta cctttttttt cggttttatt atcgtagcaa tagaaaaaaa agcttataaa
     4501 tcaagaaaat acttagcgtc aactgtgttt tttacaacat tatgcttaga gtcaattttg
     4561 ctccaataac gttaaatata ttttcattta caataattat tttatcttat cattgcattg
     4621 gttttaaaaa tgaaaattgg aatggtagtc ccgtctttaa aaaatacggc tcctaataac
     4681 ttagctttct caatatgcaa atacgggaaa aagaataaca tagatataga tctattttat
     4741 cttgataaaa ctgataatta tgcccttgac ctagacataa aagcaaaatt gttagataat
     4801 agaactatac ttgataacta tgatataatt cattcgcatg gtctaaggcc tgaccttata
     4861 aatataatgg ccaataaaaa tataattaaa gttagtacaa tccatagttt tattactgat
     4921 gatcttaaaa atagatatgg tctaaaaggt tacttgatag ctcttttttg gctcaaactt
     4981 ctgaagaagt ttaactcttg tatagcaatt agcaaaagtg ctgggaattt ttatataaaa
     5041 aataatgtca aatgctatca tatatataat ggtgttgact tcaaaaagtt taatactaat
     5101 agaaaacgta gctattcaaa tagtgagaag gaaataaaaa ttgttacaat tgctcattta
     5161 gaaaaaatta aaggattaga gcaacttttg taccttgcag cattaaaaaa aaatgttcac
     5221 gtccatatta ttggtgaagg ttctcatcgt aagaaactac tggacttaat cattaagctt
     5281 ggtatttctg aacgtgtggt tttgcatggt tatttaaata atgcgtcttc atatttagat
     5341 gattttaatg tatatgttca gccttcttta agcgaggggt ttggtatagc tgttattgag
     5401 gctcttgctg caaaaattcc aaccgtatgt tctgatattg aggtttttcg tgaattattt
     5461 aattctaatg aggtcgattt cttcaaatta aatgatatag aatcattgtt taatgcggtt
     5521 acaagggcag cacaaaaatc aaatatagaa attgatcgcg ctgcgatttc tgtatataag
     5581 cgtttttctt cagaagtaat gtctttaaat tatattaaat ggtataaaaa actatatgaa
     5641 gaaaaaaatt actaaatatt tagtgatatt cctatgttat ggcgttaatt tcatacttcc
     5701 tatccttttt tttaaggaaa taagctatat tttatcgcct gcagtactta cctcattttt
     5761 ttttgtttta gctttgctta tatattgtca gtatgttgtt gagtatgggt tacaaatatc
     5821 gttactaaaa aaattgagta ataataagct ggatttaagc tatgacattt caagcatttt
     5881 agaattaaaa atattattgt ttataacttg ttcttttttt cttttgataa tattaaccta
     5941 tagtaatgat attatattct ctatattaat tatagtacta ttagggaatg tattttcgtg
     6001 ccaattttta tatcaagtag tagatcggtt acattttttt tatataatta atactatttc
     6061 aaaaattatt tttataccat taatttatat agatagtaat tatatatatc tattgatatg
     6121 ttattcgcta tttaatgtct tcccgaatct tatatcattt actatgtttt tgtataacca
     6181 aagaattaaa ttggtttggg taccaattga aacaatattt atacttgcta aagagaaatt
     6241 cggttatttc gcctctaata tatctataac tttatatact aatttctatc aagttttact
     6301 tggaattata tctccatcat acttggctgc ctatgctctt agtgataaaa taataagagg
     6361 tgttatagca ggtaattatg tatttataca gattatacag gttcaatttt tgaatgacga
     6421 atcaaagttc cttgataaaa ttgaaaagat actcgtaatt ttatttttct taggattggt
     6481 ggaaagttgt gttattttct ttggggctag tttttttgaa gtttattttt ttccaaagat
     6541 accgatgctt tctgattttc taaagctaat gtctttcttg gttatcataa tattgatcag
     6601 caatttcttt gcaatggtgt atttaccttg cactgggaat acccacttcc tttccaaagt
     6661 attcataact gtatcaattt tctcagtaat tagcgcaccg ctattaatat attattatgc
     6721 aggttatggt gccataagcg ctgcaatttt atctgaaatg ttagtgttga ctttttgcta
     6781 tgtgttttat aggaagattc gatatgctaa taatataaaa tattaaacgt taaaacttat
     6841 tgacatactt ttacttcgat gagaattaaa attattataa ggccacattc taattgttgg
     6901 tgagtatttt cgcttgcaaa ggccttaaaa gttaatatta tttattaaca aactctgatt
     6961 tgtatttgat gattctgagt taacatctaa gccacatttc aagccgcgct ctcgtcgcgc
     7021 ggtgaccaca cctgacagga gtatgtaatg gccaagcaac agatcggcgt cgtcggtatg
     7081 gcagtg
//
