LOCUS       AY334017                8478 bp    DNA     linear   BCT 08-OCT-2003
DEFINITION  Salmonella enterica serogroup O6,14 rfb gene cluster, complete
            sequence.
ACCESSION   AY334017
VERSION     AY334017.1
KEYWORDS    .
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 8478)
  AUTHORS   Fitzgerald,C., Sherwood,R., Gheesling,L.L., Brenner,F.W. and
            Fields,P.I.
  TITLE     Molecular Analysis of the rfb O Antigen Gene Cluster of Salmonella
            enterica Serogroup O:6,14 and Development of a Serogroup-Specific
            PCR Assay
  JOURNAL   Appl. Environ. Microbiol. 69 (10), 6099-6105 (2003)
   PUBMED   14532067
REFERENCE   2  (bases 1 to 8478)
  AUTHORS   Fitzgerald,C., Sherwood,R., Gheesling,L.L., Brenner,F.W. and
            Fields,P.I.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-JUL-2003) Foodborne and Diarrheal Diseases Branch,
            Centers for Diseases Control and Prevention, 1600 Clifton Road,
            mailstop CO3, Atlanta, GA 30333, USA
FEATURES             Location/Qualifiers
     source          1..8478
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="CDC #185"
                     /serotype="Sundsvall"
                     /db_xref="taxon:28901"
                     /note="serogroup: O6,14 (H)"
     CDS             132..1136
                     /codon_start=1
                     /transl_table=11
                     /gene="wbaC"
                     /product="glycosyltransferase"
                     /protein_id="AAQ91203.1"
                     /translation="MKVIINNFFDGILKRGIPIYTSELVKKLREHNVNVIEITCPKVL
                     YTAPVWFLNIIFIITEQLFIPVLGIIYRTKYNIYPYNSSSIIDLLTGKAIVVIHDFIS
                     LKKNKKNLAAIYVKVCIYLSSFMIKKVIFISESTQRVAKKLALFKNAETVLLPNPFFS
                     FEKIANVTKKEDLGYLLLVSGLGANKDLHTAVDYYFSIPPEKRIPLKILGCGNGVDKV
                     INIINGRDLNNQIEVIGFVSLNEVVTLYSNAKIVWAHSLAEGYGRTLAEAKLTCKNVL
                     CTRISAFREQDDVNIYYYSYYSEFFKNYSYLIENPPHVVEKTLREHLLFETELRKIYE
                     "
     CDS             1129..2331
                     /codon_start=1
                     /transl_table=11
                     /gene="wbaD"
                     /product="glycosyltransferase"
                     /protein_id="AAQ91204.1"
                     /translation="MSSHDINKKRILVLTPRYPFPVVGGDRLRIYKICKELSKNYNLT
                     LLSLCDKKEELDYEYDEQVFCSVHRVYLPKIRSLINVVFSLLSKKPLQIGYYKSKEFE
                     NKLKALIGEHDASLSHLIRVGDYVKDDSGIKILEMTDAISLNYKRVKEKASLMSLKGL
                     IYSFEQKRLEQYERNIITSFDLATLVSQVDYDYLYPEKPANVIVCGNGVDATSLPFIS
                     RKIDINKTITLIFIGNLYSLQNMDGVRWFCKEVLPFLNEYGDFRFKVIGRITEKDKKW
                     LENQSGVIVTGEVDSITHAAQDGHIGICPIRLGAGIQNKVLEYMALGLPCISSTVGFE
                     GLGATGGKEIYVANTKEEYLQTINNFIINPDKYAETAISAKLFIDDNFSWEAKLNPYI
                     KKIMESVK"
     gene            2333..3748
                     /gene="manC"
     CDS             2333..3748
                     /gene="manC"
                     /codon_start=1
                     /transl_table=11
                     /product="mannose-1-phosphate guanylytransferase"
                     /protein_id="AAQ91205.1"
                     /translation="MIIPIIMAGGSGTRLWPLSRSLYPKQFLSLTSQHSLLQETLNRL
                     KGLDCLSPIIVSNNEHRFIVAEQLRQLGINNFQIILEPVGRNTAPAVALAALKALELY
                     GDHLMLVLAADHAIQNVDAFHTAIVAAEKEALNNKLVTFGIVPTKPETGFGYIKKGER
                     VNDSSFQVESFVEKPDIETAKDYLKQNCYLWNSGMFMFKASTYLEELNKYRPDILSAC
                     KESLSGACTDLDFIRLNSEKFAACPDESIDYAVMEKTQDCVVVPLDANWSDIGSWSSL
                     WDISEKDKNKNVSHGDVINYNSKNNYIYSESALISTVGVNNLIIVQTKDAVLVAQQDN
                     VQDIKKIVEILKDSKRNEHISHREVYRPWGRYDSVEHGERYKIKRIMVKPGECLSSQM
                     HHHRAEHWVVVAGTAKVTCGEQTYYVAENESTFIPIGTIHSIENPGKIPLEVIEIQSG
                     PYLEDDDIIRLADKYGRVGEK"
     gene            3753..5180
                     /gene="manB"
     CDS             3753..5180
                     /gene="manB"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomannomutase"
                     /protein_id="AAQ91206.1"
                     /translation="MNNTKEIIKNSGISFGTSGARGLVKDFKPNVCAAFTYAFVDVMS
                     TCYSFDEVALAIDNRPSSYAMAQACAAALLDCGIIPRYYGVIPTPALANQSIADRMPA
                     IMVTGSHIPFDRNGLKFYRPDGEISKENEISMLEVAKEFSDISKLPDLNCSKRAAENY
                     IKRNTSFLCGMFKGKRIGIYEHSSAGRDLYSEIFTQLGATVVTIGRSDEFIPIDTEAV
                     SKEDEAKALKWVSEYNLDMLFSTDGDGDRPLVADENGFWLRGDILGLLCSKALGIEAV
                     AVPVSCNTIIQTCGWFKNVALTKIGSPYVIAAFDNLNKNYKNVAGFEANGGYLVGSDI
                     AYNDYVIKSLPTRDAVLPALMVLALAINRGVSISGLLKNLSGRVTYSNRIQNFATERS
                     KHILQIALDDLQQFIKQLGFGSLYILSYNTIDGLRVTLSDDSIIHLRPSGNAPELRCY
                     AEADNLVKAEEIVDRVLHEIVLLGQ"
     gene            5336..6679
                     /gene="wzy"
     CDS             5336..6679
                     /gene="wzy"
                     /codon_start=1
                     /transl_table=11
                     /product="polymerase"
                     /protein_id="AAQ91207.1"
                     /translation="MNKEYYLLPSNKLRFKHLIIYLVVCLCLFSGFLINDAKTQIAQE
                     ITDILAIISSALLIVLILYYYIYRVRFFSLTLLFSFVFSLIIGLPSIYLFYFKNTDND
                     FGIICIWAMLINVALYLLSTKTFYKKEERRLSNLFYAIFFIAAFCQIYKVMIYFLFIL
                     NSGAGHLAIYTESEELLSQVPFVIRAISGFTVTMALAVFYFKSPSIIKFIAFILLASD
                     LIIGIRNKFFFSMICIFILYLYSNEIRVKHIFKKISKPTVLLVGFILFSLVSYFREGY
                     QINFVNYIGIVLDSLSSTLGGMQNLFSGQIGSWDKLSPEVVFTQILPLSGLGFINNHQ
                     IAKDFSIIVLGDVSSGIALSSSGLLESTILSLHFGSVFYLIYLIGFISLITRALNSQK
                     VLINFIAISMISGFFYAVRGELILPLAFLLKSLPIVIISPLLVKGHFRALSVESK"
     gene            6676..7929
                     /gene="wzx"
     CDS             6676..7929
                     /gene="wzx"
                     /codon_start=1
                     /transl_table=11
                     /product="flippase"
                     /protein_id="AAQ91208.1"
                     /translation="MIKEIFSDGIFSLFNKICYFGFKTLAIILVTRSLGEQVGGDFIF
                     LVGLLEVLRVVTDFGVDIFSIKKYNELSGNKLSLLNLVLNQKIISGLIVGVIFLFYCF
                     FNGYDYRTYLPVVLALPVALFFNLSNSYFQALNDNKKLTLPIVIASIVTCFVFIMQYL
                     SLAKFDAWDYLFVEFIFVFFVSAKLFRFVSFKFFKNSFFNLLKSIFILYKATLSIGLT
                     AVVVIIYSRVDNFYIKSFAPDDLAAYGQIFRMIDPLVMVSSVFSTVAYARFCRINLQE
                     KYAFSKVFQFLLCIVAYGVFSSFVYFFIMKYLGAYIVIPNVNNSYLIVVFLIVAFVKC
                     INGGTTAIIQSQGYYKIGLYISYVCIIISIPVMYFLVKMHGVKGAAMTILIVESISFI
                     LLLCGFFVIKKMPPKKFFDIYTRDH"
BASE COUNT     2716 a   1212 c   1601 g   2949 t
ORIGIN
        1 ttattggtag ctgtaagcca agggcggtag cgtggcgaac ttagtttatt atagttatca
       61 aaattaagta taaatattaa accattccgt tactaataaa agaaaaccca aagttaattt
      121 taagagtaaa tatgaaagtt attattaata attttttcga cggtattttg aagcgaggaa
      181 tacctatata tacaagtgag ctcgtaaaaa aattaaggga acataatgta aatgttattg
      241 aaataacctg tccaaaggtg ctttataccg ctccagtttg gtttcttaat attatcttta
      301 ttataactga gcaacttttt atcccggtct tggggattat atatagaact aaatataata
      361 tttatccata taatagcagc tctatcattg atttgttaac aggaaaagca atagtagtta
      421 ttcatgattt tataagctta aagaaaaata aaaaaaatct cgctgctata tatgtgaaag
      481 tatgtattta tctttcatct tttatgatca aaaaagtaat ttttatatca gaaagcacac
      541 aaagagtagc taaaaaatta gctttattta aaaacgcaga aactgtatta cttccaaacc
      601 catttttttc atttgagaaa attgcaaatg ttaccaagaa agaagatctt gggtatttat
      661 tactggtttc tggattaggg gctaataaag atttacatac tgcagtagat tattattttt
      721 cgattcctcc tgaaaaaaga ataccattaa aaatattagg atgtggaaat ggtgtagata
      781 aagttattaa tataatcaat gggcgagatt taaataatca aattgaggta ataggctttg
      841 tatcactgaa tgaagtagtt actttgtaca gtaatgcgaa aatagtatgg gctcactctc
      901 tcgctgaagg ctatggccga actttggctg aagcaaaatt aacatgcaag aatgttttat
      961 gtactcgaat atctgctttt cgagaacaag acgatgtaaa catatattat tattcatatt
     1021 actcagagtt ttttaaaaat tattcatacc ttatagaaaa tccgccacat gtagttgaaa
     1081 aaacattacg ggaacattta ttatttgaaa ctgaattgag aaaaatttat gagtagtcat
     1141 gatataaata agaaaaggat tttagtttta actcctcgtt atcccttccc tgtagttggt
     1201 ggagatcgat tacgtatata taagatctgc aaggaattat ctaaaaacta taatctaacc
     1261 ttgttaagtc tatgtgataa gaaagaggag ttggactatg aatatgatga acaagtgttt
     1321 tgtagcgttc atcgagttta tcttcctaaa ataagatctc ttataaatgt ggtcttttca
     1381 ttattgtcaa aaaaacctct tcaaatagga tattacaaat ctaaggaatt tgaaaataaa
     1441 ttaaaagcat taataggtga gcatgatgca tccctttctc acttaattag agttggtgat
     1501 tatgttaaag atgatagtgg gataaaaatc ttggagatga ctgatgcgat atcgcttaat
     1561 tataaaaggg tgaaagaaaa agcgtcctta atgagtttga aggggcttat ctattcattt
     1621 gagcaaaagc gacttgaaca gtatgaaagg aatattatta ctagttttga tttggctacg
     1681 ttagtttcgc aagttgatta cgattactta tatcctgaga aaccagcaaa tgttattgtc
     1741 tgtggaaatg gagttgatgc aacaagtctg ccttttatca gtcgtaaaat tgatataaat
     1801 aaaactataa ctcttatatt tattggtaat ttatattcat tgcaaaatat ggacggtgta
     1861 cgatggtttt gtaaagaagt attgcctttt ctgaatgaat atggggattt taggtttaaa
     1921 gttattggac gtataacaga aaaggataaa aagtggctag aaaatcaatc tggagttatt
     1981 gtcacaggag aagtggatag tataacgcat gctgcgcagg atggtcatat agggatatgc
     2041 cctattaggc taggtgcggg tattcagaat aaagtgcttg aatatatggc gttgggatta
     2101 ccatgtattt cttccacagt tgggttcgaa gggttaggtg ctacaggtgg taaagagatt
     2161 tatgtggcca atacaaaaga agaatattta caaacaataa ataattttat aattaatcca
     2221 gataaatatg ctgaaacagc aatatcggcc aagcttttca tcgatgataa tttttcctgg
     2281 gaagcgaaac tgaatcctta tattaaaaaa atcatggaga gtgttaaata aaatgattat
     2341 tcctattata atggcaggag gttcaggaac acgtttatgg cctctttcgc gatcattata
     2401 tcctaagcaa tttttgtctt taacaagtca acatagtctg cttcaagaaa cactaaatag
     2461 gttaaagggg ctggattgtt tatctccgat tattgttagt aataatgagc atcgatttat
     2521 tgtagccgag caactacgac aacttgggat taataatttc caaataattc ttgaacctgt
     2581 aggcaggaat acggcaccag ctgtagcctt agctgcttta aaggcgttgg agttatacgg
     2641 cgatcacctc atgctggttc ttgctgcaga tcatgcaatt caaaatgtcg atgcctttca
     2701 cactgcaata gtggcagccg aaaaagaagc tttaaataat aaactagtca catttgggat
     2761 agttccaacg aaacctgaaa caggttttgg atatataaaa aaaggagagc gggttaatga
     2821 ctcatcattt caggtcgagt catttgttga aaaaccagat atagaaactg ctaaagatta
     2881 tcttaaacaa aattgctatt tatggaatag cggcatgttt atgtttaaag cgagtacata
     2941 tttagaagag ctaaataaat atcgtcctga cattctatct gcatgtaaag agtcactttc
     3001 tggagcatgt actgatttag attttataag attaaattca gaaaagtttg ctgcttgccc
     3061 ggatgaatct attgattatg cagtaatgga aaaaacgcag gattgtgttg ttgttccact
     3121 tgatgcaaat tggagcgata taggatcatg gtcatcgctt tgggatatat ccgaaaaaga
     3181 caaaaataaa aatgtatctc atggcgatgt aataaattat aatagtaaaa ataattatat
     3241 ttattctgaa agtgcattaa taagtaccgt aggagttaat aatctaatta tcgtacaaac
     3301 aaaagacgca gtactcgttg cgcaacaaga taatgtacaa gatataaaaa aaatagttga
     3361 aatacttaaa gatagtaaac gaaatgaaca tatatcacac cgtgaagttt atcgcccttg
     3421 gggacgctat gattctgttg agcatggtga acgctacaag ataaaacgta ttatggtaaa
     3481 accaggtgaa tgtctatcaa gccaaatgca tcatcatcgt gccgagcatt gggttgtcgt
     3541 tgctggtaca gcgaaggtga cttgtggaga gcagacttac tacgtagcgg aaaatgagtc
     3601 taccttcatt ccgattggaa ctatccattc aatagaaaat ccaggtaaga taccattgga
     3661 agttattgaa attcagtcag gtccgtattt agaggacgat gacataattc gattagccga
     3721 taagtatgga cgtgttggag aaaaataaaa ttatgaacaa tacaaaagaa ataattaaaa
     3781 atagtggcat ttcttttggc acaagtggtg ctcgtggatt agttaaagat tttaaaccta
     3841 acgtatgcgc agcatttaca tacgcttttg ttgatgtaat gagtacatgt tattcttttg
     3901 atgaggttgc gcttgctata gataatagac caagcagcta tgcaatggcg caagcatgtg
     3961 cagccgcatt gttagattgt ggtattatac caagatatta tggagtaatt cccacccctg
     4021 cattagcgaa tcaatcaatt gctgatagaa tgcctgcgat tatggtcaca ggcagccata
     4081 tccctttcga tcgaaatggg ctgaagtttt atcgtccgga tggtgaaatc tcaaaagaaa
     4141 atgaaataag tatgctggag gttgcaaaag aattctctga cataagcaag ttaccagact
     4201 tgaattgttc taaacgtgct gctgagaatt atataaaaag aaatacttcc tttctctgtg
     4261 gaatgttcaa aggaaaacgg attggtattt atgagcattc tagtgctggg cgagatttat
     4321 attcagaaat atttacccag ttaggcgcca ctgtcgtaac tattggaaga agtgacgaat
     4381 tcatcccaat tgatacagag gctgtttcga aagaagatga agcaaaagct ttaaaatggg
     4441 tttctgaata caatctggat atgctttttt ctactgatgg tgatggtgac agaccgttag
     4501 tagcagatga aaacggtttt tggctaagag gtgatatatt aggtctctta tgttccaaag
     4561 cattaggtat tgaagcagtc gctgtccctg taagttgcaa tacaattatt caaacgtgtg
     4621 ggtggtttaa aaatgtagct ttgacaaaga ttggctcgcc atatgtgatc gcggcttttg
     4681 ataatcttaa taagaattat aaaaatgtag ctggttttga agctaacggt ggataccttg
     4741 taggtagtga tatagcatat aatgattatg tgataaaatc acttccaact cgagatgctg
     4801 ttctgcccgc tttgatggtc cttgctttag caattaatcg tggcgtttct atatctggtc
     4861 tcctgaagaa tcttagcgga cgtgttactt attcgaatag aattcaaaac tttgcaacag
     4921 aaagaagtaa gcatatcctt caaatagcct tggatgactt acaacaattt ataaagcaac
     4981 ttggctttgg tagtttgtac attctttcct ataacactat agatggatta agagtcacgc
     5041 tgagtgatga ttcgataatt catttgagac cctcaggaaa tgctcctgaa ttacgttgtt
     5101 atgccgaagc tgataatctt gttaaggcag aagaaatagt tgacagagta ttacatgaaa
     5161 ttgtattact gggacagtaa atatattttt taagataaaa tgatgttaag cggtttatgt
     5221 aaaactgctt aacttaatgc agtaaatcat aatgctactt tttatttatt aaataatttt
     5281 ttgttgaaaa gtgtttgttc actgtattgt acttctaata tatttgttga taaaaatgaa
     5341 taaagaatat tatttactgc cttcgaataa attaagattt aaacacttga ttatatatct
     5401 tgtggtatgc ctgtgccttt tttctggctt tcttatcaat gatgcaaaga ctcagatagc
     5461 tcaagaaatt actgatatat tagcaataat atccagcgcg ttgctaattg tgctaattct
     5521 gtattattat atatatcggg tgcgcttttt ttctctgacg ctactatttt cttttgtttt
     5581 ttcactaata attggtttgc cttcgatata tctcttttat tttaaaaaca cagataatga
     5641 ctttgggatt atttgtatat gggcaatgct aattaatgtt gctctctatc tactttcaac
     5701 aaaaactttt tataaaaaag aagaaaggcg tttatccaac ctcttttatg cgatattttt
     5761 tattgcagca ttttgccaga tctataaggt tatgatttat tttcttttta ttcttaattc
     5821 tggtgccggg catctcgcaa tatatacaga aagcgaagag ttattatccc aagtgccctt
     5881 tgttatacgt gctataagtg gttttacagt aactatggca ttggctgttt tttattttaa
     5941 aagtccaagt ataataaaat ttattgcatt tatcctgcta gcttcagatt taattatagg
     6001 gatacgtaat aaattctttt tttcaatgat atgcatattt atactatatt tatattcaaa
     6061 tgagattaga gtaaagcata ttttcaaaaa aatctcaaaa cctactgttc ttctggttgg
     6121 ttttatatta ttttctttgg tttcatattt tagagaaggc taccagatta attttgtaaa
     6181 ttatattggt attgtattag attctttgtc gtctactctt ggtggtatgc agaatttatt
     6241 tagtggacaa atagggagtt gggataagtt aagtcctgaa gtcgtattca cacagatatt
     6301 gccgttaagt ggtttaggtt ttattaacaa ccatcaaatt gcaaaggatt tttctatcat
     6361 tgtactaggc gatgtttcat caggtattgc attgtcatcc tccggattat tagagtcgac
     6421 aatattaagc ctacactttg gatctgtatt ttatttaatc tatctaatag gctttatttc
     6481 attaataaca cgcgcattga atagtcaaaa agtattaata aacttcattg ctatttcaat
     6541 gatttccggt ttcttctatg cagtgcgggg agagttgata ttacctttag ctttcttatt
     6601 aaagtctctg cctatcgtta taatatcccc cttgcttgta aaagggcatt ttagggcttt
     6661 gtcagtagaa tcaaaatgat caaagaaata ttttctgatg gtattttttc tttatttaat
     6721 aaaatttgtt attttggctt taaaacatta gcaataattc ttgttactcg ttcattagga
     6781 gagcaggttg gtggtgattt tatattctta gtcggtttgt tagaggtttt acgtgtagta
     6841 accgattttg gtgtagatat attttctata aaaaaataca atgagctaag tggtaataaa
     6901 ctatcattgc tcaatttggt tttaaatcaa aagattattt ctggtttaat cgtgggagta
     6961 atttttttat tttattgttt ttttaatgga tatgattata gaacttattt gccggttgta
     7021 ttagcactac ctgtggcgtt attctttaat ttgtcaaata gctattttca ggcactcaat
     7081 gataataaaa agctgacctt gccaattgtt attgcttcaa tagtaacttg ctttgttttc
     7141 attatgcaat atttgtcttt agcgaagttt gatgcttggg attatttgtt tgttgagttt
     7201 atattcgttt tctttgtctc cgctaagcta tttcggtttg taagttttaa gttctttaaa
     7261 aatagctttt ttaatttgtt aaagtcaatc tttattttat ataaagcgac cttgagtatt
     7321 gggctcactg ctgtagtagt tataatttat agtagagtgg ataatttcta cattaagagt
     7381 tttgctcctg atgatttagc tgcatatggt caaattttca ggatgattga tccacttgta
     7441 atggtatctt cagtattctc taccgtagct tatgcacggt tttgtcgtat aaatttgcag
     7501 gaaaaatatg ctttctcaaa agtttttcaa ttcctgcttt gcattgtcgc ttatggtgta
     7561 tttagttctt tcgtatattt ttttattatg aaatatttgg gggcgtatat agttattcct
     7621 aatgttaata atagctattt aattgtggta tttttaattg ttgcatttgt aaaatgtatt
     7681 aatggtggta ctaccgcaat aattcaatca caagggtatt ataaaatagg tttgtatatc
     7741 tcatatgtct gcataataat ttcaattcct gtaatgtatt ttttagttaa gatgcatggt
     7801 gttaaaggtg ctgcgatgac tatcttgata gtggagagca tcagttttat attactttta
     7861 tgtggatttt ttgtaattaa gaaaatgcct cctaaaaaat ttttcgatat ttatacccgt
     7921 gatcattgaa gacgcttgat ttttcagcaa caggagatca tgctgctcac catgaaaata
     7981 ttcatcactg accaacaaaa agctgagcct gagcgtcttc atgactccag tcgtgacaag
     8041 cgcgttaaag ctattcttct ggcttccgaa ggctggagtt cagctacgat cgctcaagct
     8101 ttgtgcctgc ttcagaccac agttgaccac cagatcagcg agtttctgaa caaagggaag
     8161 ctcagatctg aaaacggtgg ctcagacagc aaactcagcg ctgaacaaac ggctttttta
     8221 atcagctagt tatccgataa tttatttcac catgcctgca tcttgaggtt tttgggtata
     8281 gataataaag ttttcgaata aattaagaat aactctcatt gttattaatt aacatttagc
     8341 tacacaacac ctaacatata ttgtagatta tttgatattg ataagttttc taatataact
     8401 gcgttaaacg cggtgaccac acctgacagg agtatgtaat gtccaagcaa cagatcggcg
     8461 tcgtcggtat ggcagtga
//
